PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 207aa MW: 24457.9 Da PI: 6.6452

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g034120.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	9.3e-20	55	110	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR +++eq++ Le+ F ++++ e++++LA++lgL+ qV vWFqN+Ra++k+ Solyc03g034120.2.1 55 KKRKLLSEEQVNLLERSFGDEHKLEMERKAKLASELGLDPHQVAVWFQNKRARWKN 110 89****************************************************95 PP
2	HD-ZIP_I/II	106.9	1.5e-34	56	146	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k++ ls+eqv+lLE+sF e+kLe erK++la+eLgl+p+qvavWFqn+RAR+k+k+lE++y++Lk++++ e+ rLe+ev +++e+l Solyc03g034120.2.1 56 KRKLLSEEQVNLLERSFGDEHKLEMERKAKLASELGLDPHQVAVWFQNKRARWKNKKLEEEYSKLKTQHELTIIEKYRLESEVLKMKEQLF 146 555689*********************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.925	51	111	IPR001356	Homeobox domain
SMART	SM00389	2.6E-18	53	115	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-17	55	119	IPR009057	Homeodomain-like
CDD	cd00086	6.92E-14	55	112	No hit	No description
Pfam	PF00046	6.5E-17	55	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-20	56	118	IPR009057	Homeodomain-like
PRINTS	PR00031	7.9E-6	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-6	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MTSSKVDDQM ELISHFYPHI YAQLAQQQGE TVKPRRRRKK NEIEGRNNTS EVVMKKRKLL 60 SEEQVNLLER SFGDEHKLEM ERKAKLASEL GLDPHQVAVW FQNKRARWKN KKLEEEYSKL 120 KTQHELTIIE KYRLESEVLK MKEQLFEAQK EIERLLLEHK SDISSNNSPT SSIFSMEQPH 180 FDLGELILEG QLMDDNMLFN ITLWDN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	57	RKKNEIEGRNNTSEVVMKKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g034120.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234615.1	1e-150	homeobox-leucine zipper protein ATHB-40-like
Swissprot	Q9ZU70	1e-57	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	A0A3Q7FG26	1e-148	A0A3Q7FG26_SOLLC; Uncharacterized protein
STRING	Solyc03g034120.2.1	1e-149	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80
Representative plant	OGRP3776	10	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-57	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Solyc03g034120.2.1
Entrez Gene	101250869

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]