PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GATA

Protein Properties

Length: 296aa MW: 33283.4 Da PI: 9.4449

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g033660.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.8	3.1e-18	214	248	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l Solyc03g033660.2.1 214 CSHCGVHKTPQWRTGPMGAKTLCNACGVRFKSGRL 248 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.3E-77	29	288	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.635	208	244	IPR000679	Zinc finger, GATA-type
SMART	SM00401	6.0E-17	208	262	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.61E-14	210	271	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.2E-14	212	246	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.16E-13	213	270	No hit	No description
PROSITE pattern	PS00344	0	214	239	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.7E-16	214	248	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MLYRTAPHYS SSPLQMNSLE KALKTSYFRP ETAMKMTHNQ PSIDDFFVDN LLDLSNGFAE 60 DEIEQLNEHP NGFNTQNLCS VSPQKKMEDE NGDFGCELSY PENGLDNLEW LSQFVEEDSH 120 SGYSLIGKLP VKKNKSVTEN PVQVNSCFTV PVQTKPRTKR RRIGGRVWSF TGSSTSSASS 180 STITTTAESI VRFPASVSNR RKMKTEKPVQ PRRCSHCGVH KTPQWRTGPM GAKTLCNACG 240 VRFKSGRLLP EYRPACSPTF SSERHSNNHR KVLEMRQKKE ERTGGDRFAP PVHSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	162	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g033660.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215435	9e-36	Solanum lycopersicum chromosome 2 clone C02HBa0291P19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234546.1	0.0	GATA transcription factor 5-like
TrEMBL	A0A3Q7G565	0.0	A0A3Q7G565_SOLLC; GATA transcription factor
STRING	Solyc03g033660.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1154	24	81
Representative plant	OGRP68	17	287

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	9e-53	GATA transcription factor 5

Link Out ? help Back to Top
Phytozome	Solyc03g033660.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]