PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g026350.2.1
Common NameLOC101261301
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 432aa    MW: 47314.1 Da    PI: 7.6149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g026350.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.5e-08109130426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+++ + G C yG++C++ H+
  Solyc03g026350.2.1 109 KVCNYWVK-GNCTYGNTCRYLHS 130
                         68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.482449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2772450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7106130IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5107131IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-6109129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.7E-15130235IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.7E-6136175IPR001680WD40 repeat
SuperFamilySSF509786.71E-43138425IPR017986WD40-repeat-containing domain
PfamPF004004.7E-6139175IPR001680WD40 repeat
PROSITE profilePS5008213.917143184IPR001680WD40 repeat
PROSITE profilePS5029419.406143391IPR017986WD40-repeat-containing domain
PRINTSPR003201.1E-6162176IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM00320160215251IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.4E-30236427IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.0E-4258295IPR001680WD40 repeat
PfamPF004007.1E-4260295IPR001680WD40 repeat
PROSITE profilePS5008212.614265304IPR001680WD40 repeat
PRINTSPR003201.1E-6282296IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780282296IPR019775WD40 repeat, conserved site
SMARTSM003204.0E-4298335IPR001680WD40 repeat
PfamPF004000.0064300334IPR001680WD40 repeat
PRINTSPR003201.1E-6322336IPR020472G-protein beta WD-40 repeat
SMARTSM0032014339382IPR001680WD40 repeat
SMARTSM003204.1385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEMDGSKRVF QRLGPSSQGD TSNNKQQKVC FHWRAGRCNR FPCPFLHREL PGPPQQQQHA  60
AGNGMSSSKR PHGFSDDNRG SGMRRNPNFN NTWGRTAAGG GAVVRKTEKV CNYWVKGNCT  120
YGNTCRYLHS WTTGDCFTLL TTLEGHQKVV TGIALPSGSD KLYSGSTDKS VRVWDCQSGQ  180
CAGVVNFDGE VGSMLSEGPW IFVGLTNLVK AWNTQTGTDL SLNGPVGQVY ALVVGNDMLL  240
AGTEDGILAW KYNGSTNNFD PIKALTGHSH HVVSLVVGAN RLYSGSMDNS IRVWNLETLE  300
CLQILTDHTS VVMSVLCWDQ FLLSCSLDKT IKVWAANDSG NLEVTYTHQE DCGVLTLCGM  360
HDSEAKPVLL CSRNDNTIRV YDLPSFSERG KIFSKEGVRR IEIGPAGLFF TGDESGQVRV  420
WKWSTESSST S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A8e-211404258323Tako8
6g6n_A8e-211404258323Tako8
6g6n_B8e-211404258323Tako8
6g6n_C8e-211404258323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.129640.0cell culture| floral bud| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g026350.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234345.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A3Q7G4750.0A0A3Q7G475_SOLLC; Uncharacterized protein
STRINGSolyc03g026350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]