PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g025870.2.1
Common NameLOC101265998
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 280aa    MW: 31876.7 Da    PI: 6.7402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g025870.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W+++Ed++l+++  ++G g+W++++   g+ R +k+c++rw +yl
  Solyc03g025870.2.1 16 KGLWSPDEDDRLKNYMIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 63
                        678*******************************************97 PP
2Myb_DNA-binding53.36.3e-1769114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ eE+++++ +++++G++ W+ Ia+ ++ gRt++++k++w++yl
  Solyc03g025870.2.1  69 RGAFSLEEEDIILTLHAMFGNK-WSQIAQQLP-GRTDNEIKNHWHSYL 114
                         89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4441163IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-211166IPR009057Homeodomain-like
SuperFamilySSF466891.58E-2814110IPR009057Homeodomain-like
SMARTSM007171.9E-101565IPR001005SANT/Myb domain
PfamPF002497.0E-131663IPR001005SANT/Myb domain
CDDcd001679.18E-91963No hitNo description
PROSITE profilePS5129426.90564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2567118IPR009057Homeodomain-like
SMARTSM007176.8E-1668116IPR001005SANT/Myb domain
PfamPF002491.0E-1569114IPR001005SANT/Myb domain
CDDcd001674.77E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGCKLAAEKP KQKHKKGLWS PDEDDRLKNY MIKHGHGCWS SVPINAGLQR NGKSCRLRWI  60
NYLRPGLKRG AFSLEEEDII LTLHAMFGNK WSQIAQQLPG RTDNEIKNHW HSYLKKRVSK  120
MGENEGHTKP GKTDSSSPSL KKLTPQNSSL DSFEHIEGSL ADSDQSVYPR ETQKSNLPKV  180
LFAEWLSLDQ FNGQDFQNSG SFSFEPCKSN FVYNNNAELH DILMHSLPMN NDDGNGVNQE  240
VLHNDIFPPQ LKFEDTLSGN GFEEFMSREF NINDDVMYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g025870.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8049961e-13Solanum lycopersicum cultivar Micro-Tom ADH1 mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234444.10.0transcription factor LAF1-like
SwissprotQ8LPH61e-53MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A3Q7FEY00.0A0A3Q7FEY0_SOLLC; Uncharacterized protein
STRINGSolyc03g025870.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.14e-61myb domain protein 19
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]