PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 216aa MW: 24702 Da PI: 9.2064

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g007020.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.3	8.1e-13	53	100	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien+ r++tfskRr ++ KKA+EL d++v + +fs+t+k y + Solyc03g007020.1.1 53 KIENEDARYTTFSKRRSTLYKKASELVGKYDVDVGITLFSPTDKPYSF 100 59****************************************998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-16	44	103	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.236	44	104	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-19	45	123	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-9	46	66	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-18	53	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-9	66	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-9	81	102	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MGSKIRGLTL SNHETFSQVF LPINLFFRKN ILHQKLSHGK KKTLGRQKIS MVKIENEDAR 60 YTTFSKRRST LYKKASELVG KYDVDVGITL FSPTDKPYSF FHPTVDVVVD RILNPNTQPS 120 EDNSIAIASY RNKVKDQKVE LDELDIIERG ISNSTFGTKE TNMKNIWESF MKFNEDEVNE 180 LELWLNSIDF DLKNYLSQLE NNVSSSTQAP PKNVG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g007020.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886043.1	1e-118	agamous-like MADS-box protein AGL62
TrEMBL	M1DGC1	4e-82	M1DGC1_SOLTU; Uncharacterized protein
STRING	Solyc03g007020.1.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-22	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Solyc03g007020.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]