PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 248aa MW: 28034.1 Da PI: 8.4862

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g006910.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.5e-11	80	130	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++ Lr+llP ++K s ++ +A +YIk++q Solyc03g006910.2.1 80 IIHRDIERQRRQEMAALYSSLRSLLPLqY---VKGKRSVSDHMHEAANYIKEMQ 130 5699*********************66...9*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.60E-8	76	130	No hit	No description
PROSITE profile	PS50888	12.684	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-12	78	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-10	81	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-8	81	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0090575	Cellular Component	RNA polymerase II transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MFSLQGSDDL LIQILSNTCQ QNKSSLDAVM DFASTDTITR THIPPNINSQ KKIISKRKLS 60 THSNKNDGIA SDDHFKLKKI IHRDIERQRR QEMAALYSSL RSLLPLQYVK GKRSVSDHMH 120 EAANYIKEMQ GNIKELEKRR DLLMKSIRHG NENADKNNRF TDCTVTVSPW LQEGIEISIS 180 VDCEGKTFPL SKILGELLKQ GLNVVSCVSA KADQRSLYSI HTEACDMNNI DHLALQQKVI 240 DMINLDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g006910.2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234146.1	0.0	transcription factor bHLH120-like
TrEMBL	A0A3Q7FDI6	0.0	A0A3Q7FDI6_SOLLC; Uncharacterized protein
STRING	Solyc03g006910.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109
Representative plant	OGRP1638	8	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	2e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc03g006910.2.1
Entrez Gene	101267867

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]