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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc03g006830.2.1 |
Common Name | FYFL |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 223aa MW: 25369.2 Da PI: 9.4562 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc03g006830.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 91.5 | 4.2e-29 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRrng+ KKA+ELSvLCdaeva iifs++g+lye++s
Solyc03g006830.2.1 2 KRIENSTSRQVTFSKRRNGLTKKAYELSVLCDAEVAFIIFSHKGRLYEFAS 52
79***********************************************86 PP
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2 | K-box | 74.5 | 3e-25 | 78 | 165 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
e+ +e+l++e a++ k+ie L+ ++R+l+G++L+s+s+ eL+ + +qLe+ lk iR++K++l++e+ie l+ ke+ l ++n +Lr+k
Solyc03g006830.2.1 78 LEHYMENLKHETANMAKKIEILEISKRKLMGQGLGSCSMDELEDIDSQLERTLKIIRARKTQLFKEEIESLKAKERLLLQQNASLREK 165
466789********************************************************************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009838 | Biological Process | abscission |
GO:0009909 | Biological Process | regulation of flower development |
GO:0010150 | Biological Process | leaf senescence |
GO:0080187 | Biological Process | floral organ senescence |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MKRIENSTSR QVTFSKRRNG LTKKAYELSV LCDAEVAFII FSHKGRLYEF ASSNMQKIIE 60 RYRGRARETT TVDKSTELEH YMENLKHETA NMAKKIEILE ISKRKLMGQG LGSCSMDELE 120 DIDSQLERTL KIIRARKTQL FKEEIESLKA KERLLLQQNA SLREKCGLRP MLSESASAPE 180 PIPAPPSTPP AQSKERGNCS QSTKSWEVET ELFIGLPQTR CL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3mu6_A | 8e-18 | 3 | 62 | 9 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 8e-18 | 3 | 62 | 9 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 8e-18 | 3 | 62 | 9 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 8e-18 | 3 | 62 | 9 | 68 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |