 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc03g006800.1.1 |
Common Name | TCP21 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
TCP |
Protein Properties |
Length: 327aa MW: 34792 Da PI: 5.4993 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc03g006800.1.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 115.6 | 6.3e-36 | 88 | 179 | 3 | 100 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92
+ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++ +++ + +sn++ +
Solyc03g006800.1.1 88 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsVNGTLKIPTSNNEGE---- 174
5699***********************************************************999995553222222222211111.... PP
TCP 93 saakskks 100
+s+k+
Solyc03g006800.1.1 175 ---SSRKR 179
...11111 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MARVENNQNI EQEDDEVNDC KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP AASTDRVLLL 60 KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV EGRGRRIRMP AACAARIFQL 120 TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTSN NEGESSRKRR 180 KRAANSEFYE ASNFAPVAPI APQGLVPVWP VGSGNGLIPT TAFTGGATFY MLPPGTNTTV 240 AATGAQLWAT PILNVPYAAT GVSAACVSKS DNNGGKLSTV ASAMPPSSSS TQMLRDFSLE 300 IYDKRELQFM VGSGSSEIDQ TSSSKS*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC235800 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0137K15, complete sequence |
GenBank | GQ496339 | 0.0 | Solanum lycopersicum TCP transcription factor 21 (TCP21) mRNA, complete cds |