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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc03g005570.2.1 |
| Common Name | LOC101262488 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 252aa MW: 29258.7 Da PI: 4.9779 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc03g005570.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W eEd++l+ ++++ G g+W++ +r g+ R++k+c++rw +yl
Solyc03g005570.2.1 14 KGSWDHEEDQILISYINKNGHGNWRALPRQAGLLRCGKSCRLRWMNYL 61
799*****************************99************97 PP
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| 2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
Solyc03g005570.2.1 67 RGNFTKEEEDNIINLHEILGNR-WSAIAARLP-GRTDNEIKNIWHTHL 112
89********************.*********.***********9986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MDRAPSCEKT SLKKGSWDHE EDQILISYIN KNGHGNWRAL PRQAGLLRCG KSCRLRWMNY 60
LSPHIKRGNF TKEEEDNIIN LHEILGNRWS AIAARLPGRT DNEIKNIWHT HLKKRLKNCQ 120
SPRSFKRHKK INQINNCMHA PNSPEISSSE TSIMTTNSSS SGTFDTTIDD QIVIKQEEMD 180
SSEYFAKIDE SFWTDELTIE NNFDFVTNMD GEEFESLDMF NSTTIMEDDI DMDFLFNFFI 240
KTEEFSELPE L*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (PubMed:17015446, PubMed:19161942). Expressed in stomatal guard cells (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CU468268 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-207A3, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Schnaubelt D, et al.
Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
Plant Cell Environ., 2015. 38(2): p. 266-79
[PMID:24329757] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ma X, et al.
CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
Plant Mol. Biol., 2015. 88(3): p. 287-99
[PMID:25948280] - Kim SH, et al.
Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
Nucleic Acids Res., 2017. 45(11): p. 6613-6627
[PMID:28510716] - Chezem WR,Memon A,Li FS,Weng JK,Clay NK
SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
Plant Cell, 2017. 29(8): p. 1907-1926
[PMID:28733420] - Pal S, et al.
TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
Plant Physiol., 2017. 175(2): p. 916-926
[PMID:28827455]
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