PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 176aa MW: 20073.6 Da PI: 9.4647

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g005510.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	6.1e-19	49	100	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr + +g+++AeIrdp+ +g +r +lg+f+tae+Aa+a+++a+ +l+g+ Solyc03g005510.1.1 49 KYRGVRKRT-WGKFAAEIRDPTRQG--ARQWLGTFDTAEDAARAYDKAAFNLRGH 100 8***887.******96544..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.7E-12	49	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.6E-31	49	109	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-35	49	113	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.723	49	107	IPR001471	AP2/ERF domain
CDD	cd00018	3.00E-30	49	108	No hit	No description
SuperFamily	SSF54171	8.5E-23	49	108	IPR016177	DNA-binding domain
PRINTS	PR00367	3.3E-10	50	61	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-10	73	89	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MSMWCVPPKK NLSHIIINMD SSSSSSSSKG KKVIQLEKEN SKDSNDLIKY RGVRKRTWGK 60 FAAEIRDPTR QGARQWLGTF DTAEDAARAY DKAAFNLRGH LATLNFPNEY YSKLNDPHYY 120 NYRTSLNVNI PSRSLERGIS SIGHQDKEII EFEYLDDSVL EELLGAEDPK KIIRK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-29	49	159	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g005510.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU468268	0.0	S.lycopersicum DNA sequence from clone LE_HBa-207A3, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234235.3	1e-113	ethylene-responsive transcription factor ERF098-like
Refseq	XP_027771791.1	1e-113	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	6e-45	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A3Q7FEY8	1e-127	A0A3Q7FEY8_SOLLC; Uncharacterized protein
STRING	Solyc03g005510.1.1	1e-128	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	7e-38	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc03g005510.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]