PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 130aa MW: 14822.2 Da PI: 7.0722

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g005500.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.1	1.2e-19	5	57	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrd +++ r++lg+f +aeeAa+a+++a+ +++g+ Solyc03g005500.1.1 5 KYRGVRKRP-WGKYAAEIRDtNRQG--GVRVWLGTFSSAEEAARAYDKAAYNMRGH 57 8******.******33333..4************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	7.19E-21	5	65	IPR016177	DNA-binding domain
SMART	SM00380	3.2E-32	5	70	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-14	5	57	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.064	5	64	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-29	5	66	IPR001471	AP2/ERF domain
CDD	cd00018	1.33E-27	5	65	No hit	No description
PRINTS	PR00367	4.1E-11	6	17	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-11	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MDEVKYRGVR KRPWGKYAAE IRDTNRQGGV RVWLGTFSSA EEAARAYDKA AYNMRGHLAI 60 LNFPEEYNLP RSSSHFYNNS SSMPSSSSSS NVHARNDQQG NRQVLELEYL DDHVLEELLD 120 CDQHANNRK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-33	5	114	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g005500.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240194	2e-07	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-118f23 map 10, complete sequence
GenBank	AC245345	2e-07	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-35f20 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886110.1	3e-93	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	3e-39	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A3Q7G131	7e-92	A0A3Q7G131_SOLLC; Uncharacterized protein
STRING	Solyc03g005500.1.1	1e-92	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-29	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc03g005500.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]