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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g094170.2.1 |
Common Name | LOC101268333 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C2H2 |
Protein Properties |
Length: 255aa MW: 28802.5 Da PI: 9.0085 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g094170.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 96 | 118 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+++++++ +L H + H
Solyc02g094170.2.1 96 SCSVCSRVYPTSRLLSIHVSEaH 118
6*****************99877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MAMEFDRQIE LGFPFWSPTR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EENQLVQNSI 60 TDDEISNLFC PIIGCGAQMK NLDDFEDHYV TRHTASCSVC SRVYPTSRLL SIHVSEAHDS 120 FFQAKAARGF PMYECLVEGC DIKLKSYKSR QQHLVDKHKF PASYEFFRKA RPSKKQRLKP 180 HHKQASNKTQ EKSSAMQVEE ETIDNLVSAV SKLTTSDSPS AISFGRSRAR GLSFVPRAVN 240 RQRGPVTSTG GTKN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC215418 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0204A09, complete sequence |
GenBank | AC215457 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0061K08, complete sequence |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G14140.1 | 1e-106 | zinc ion binding;nucleic acid binding;zinc ion binding |