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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g093740.2.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 251aa MW: 28840.4 Da PI: 5.9771 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g093740.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd +lv+ + G +W+t+++ g+ R++k+c++rw +yl
Solyc02g093740.2.1 14 RGPWTIEEDHKLVHFILNNGIQCWRTVPKLAGLQRCGKSCRLRWINYL 61
89********************************************97 PP
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| 2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
Solyc02g093740.2.1 67 RGALSEAEEDQIIELHARLGNR-WSKIASYFP-GRTDNEIKNHWNT 110
78889*****************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTV PKLAGLQRCG KSCRLRWINY 60
LRPDLKRGAL SEAEEDQIIE LHARLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLQVMG 120
IDPLTHQPID KEHETDELLP ITETYYDKRN ETENNIENAN DISLPNNRLS ENINGELWNK 180
SFKTISTCYS PSISLESINF STTSTATESS SNVAAAPAEE DDSVQQWMDS IFSCAINQLE 240
EDLFLLRKYN *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215376 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0072B02, complete sequence |
| GenBank | AC215464 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0121H01, complete sequence |
| GenBank | AC235801 | 0.0 | Solanum lycopersicum chromosome 3 clone C03HBa0140L21, complete sequence |
| Publications
? help Back to Top |
- Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
ODORANT1 regulates fragrance biosynthesis in petunia flowers.
Plant Cell, 2005. 17(5): p. 1612-24
[PMID:15805488] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
Expression patterns of myb genes from Antirrhinum flowers.
Plant Cell, 1991. 3(2): p. 115-25
[PMID:1840903]
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