PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g092550.2.1 | ||||||||
Common Name | LOC101258116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23981.3 Da PI: 7.3662 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.6 | 3.6e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA r+ +Pv+Gavg++++++++ Solyc02g092550.2.1 2 SCNGCRVLRKGCSDNCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGNWH 92 6****************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Solyc02g092550.2.1 93 VCQAAVETVLR 103 *****999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.156 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDNCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASVEI 120 DEVSDCTDVF KLQDPSLNMR PKMQKRRRSP EETSMLDLSL TPGFNQKVYN SHPLPENHRR 180 PGTPSMNSEE SGTTTCFESS AVIGDHQGKE PKLLSLFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 146 | PKMQKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.22596 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g092550.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226516 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0053H21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231911.1 | 1e-163 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 5e-81 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A3Q7FBF8 | 1e-162 | A0A3Q7FBF8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g092550.2.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-83 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g092550.2.1 |
Entrez Gene | 101258116 |
Publications ? help Back to Top | |||
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