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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g092170.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 85aa MW: 9761.14 Da PI: 8.9713 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.9 | 1.6e-13 | 33 | 77 | 1 | 45 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 kfY +YA++ GFsvrk++ ++s+++++i+ ++fvCskeg+r ++ Solyc02g092170.1.1 33 KFYLDYAHRNGFSVRKNRISRSRKDKSIIGQEFVCSKEGFRLKKC 77 6***************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-11 | 33 | 77 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MNAVVSFVPQ LGEQELREPY IGMEFQSLDT GFKFYLDYAH RNGFSVRKNR ISRSRKDKSI 60 IGQEFVCSKE GFRLKKCNQA CNCD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g092170.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226502 | 1e-142 | Solanum lycopersicum chromosome 2 clone C02HBa0030E13, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019068484.1 | 3e-47 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_025884696.1 | 6e-49 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_025884722.1 | 4e-48 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025884850.1 | 3e-47 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025888960.1 | 5e-46 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A3Q7IST4 | 2e-54 | A0A3Q7IST4_SOLLC; Uncharacterized protein | ||||
TrEMBL | V9GZJ3 | 6e-56 | V9GZJ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g092170.1.1 | 1e-56 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-16 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g092170.1.1 |
Publications ? help Back to Top | |||
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