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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g091930.2.1 |
Common Name | LOC101246982 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HD-ZIP |
Protein Properties |
Length: 269aa MW: 29897.8 Da PI: 8.2052 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g091930.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.1 | 3.1e-18 | 123 | 177 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tk q Lee F+ +++++ +++++LA++l+L rqV vWFqNrRa+ k
Solyc02g091930.2.1 123 RKKLRLTKPQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 177
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 124.1 | 6.4e-40 | 123 | 212 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+k q++lLEesF+ +++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
Solyc02g091930.2.1 123 RKKLRLTKPQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELK-AL 212
69*************************************************************************************9.44 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009735 | Biological Process | response to cytokinin |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MGFDDICNTG LVLGLGFSST ADHKSKKITT TPLVGKGPCV GFEEPSLTLS LISGDRTYEQ 60 QAMKISKDHQ SADLYRQDSA ASSYSNASVK RERDVGSEET TTEVERLSSR VISDEDDDGS 120 NARKKLRLTK PQSALLEESF KIHSTLNPKQ KQDLARELNL RPRQVEVWFQ NRRARTKLKQ 180 TEVDCEFLKK CCETLTDENR RLHKELQELK ALKIAQPLYM QLPAATLTMC PSCERIGGGV 240 GETPSKNAFT IAQKPHLYSP FNNPSAAC*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 171 | 179 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]
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