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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc02g091440.1.1 |
| Common Name | LOC101248268 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
bHLH |
| Protein Properties |
Length: 318aa MW: 35138 Da PI: 6.5203 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g091440.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 28.4 | 3e-09 | 234 | 277 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq
Solyc02g091440.1.1 234 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAIGYVKFLQ 277
5679*******************5.....5******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0048766 | Biological Process | root hair initiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005739 | Cellular Component | mitochondrion |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MSMALAKEHV IMSDTKMGMV DNYDQYYEGE FGINDHSSPE LYGIHEEPPK SIFEECENSE 60
KTSPKIAKNF ALSSSNSSLS SPSSSNSNAQ SVINFKGVYG NFMHSANGSL LSFEQSERFC 120
PNPRMISNIN QVEGSVWEDN NLHYQNCVTP KGSSNTSPRV INDNSNNNGI PFGWLNSEAN 180
ASTTTHIDES RFNKRPSTEE SMQTNKKQCS AGSKKGKPNN NNNNSIGTKD PQSIAAKNRR 240
ERISERLKIL QELVPNGSKV DLVTMLEKAI GYVKFLQLQV KVLATDEFWP TQGGKAPDIS 300
QVKEAIDAIL ATQRDRN*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed constitutively in flowers. {ECO:0000269|PubMed:12679534}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Lin CY, et al.
Pathways involved in vanadate-induced root hair formation in Arabidopsis.
Physiol Plant, 2015. 153(1): p. 137-48
[PMID:24833217] - Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
Root hairs.
Arabidopsis Book, 2014. 12: p. e0172
[PMID:24982600] - Kim CM,Dolan L
ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
PLoS Genet., 2016. 12(8): p. e1006211
[PMID:27494519] - Moro CF, et al.
S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
New Phytol., 2017. 213(4): p. 1771-1786
[PMID:27880005] - Bahmani R,Kim DG,Kim JA,Hwang S
The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
Front Plant Sci, 2016. 7: p. 1763
[PMID:27933081] - Liao X,Lovett B,Fang W,St Leger RJ
Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
[PMID:28708056] - Feng Y, et al.
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
[PMID:29233944]
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