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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g090820.2.1 |
Common Name | HSTF24 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 302aa MW: 33257.3 Da PI: 5.594 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g090820.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 115.8 | 2.8e-36 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl k+y++++d++++++isw+e g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fk+g+ke
Solyc02g090820.2.1 10 FLLKTYQLVDDATTDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKE 91
9****************************************************************999.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll+ i+r+k+
Solyc02g090820.2.1 92 LLTAIRRRKT 101
*******986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009408 | Biological Process | response to heat |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MSQRTAPAPF LLKTYQLVDD ATTDDVISWN EIGTTFVVWK TAEFAKDLLP KYFKHNNFSS 60 FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIRRRK TVTSIPAGGK SVAAGTSASP 120 DNSGDDIGSS STSSPDSKNP GSVDTPGKLS QFTDLSDENE KLKKDNQMLS SELVQAKKQC 180 NELVAFLSQY VKVAPDMINR IMSQGTPSGS SLEELVKEVG GVKDLEEQGS YNDNDDKEDD 240 DEKGDTLKLF GVLLKEKKKK RGPDDNIETC GGRGKMMKTV DYNGPWMKMS STAGESSKVC 300 N*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 6e-25 | 6 | 104 | 17 | 125 | Heat shock factor protein 1 |
5d5u_B | 6e-25 | 10 | 101 | 29 | 131 | Heat shock factor protein 1 |
5d5v_B | 6e-25 | 10 | 101 | 29 | 131 | Heat shock factor protein 1 |
5d5v_D | 6e-25 | 10 | 101 | 29 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Les.8471 | 0.0 | callus| cell culture| flower| fruit| leaf| root| stem |
Functional Description ? help
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Source |
Description |
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC215355 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence |
GenBank | AC233643 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |
GenBank | AC233695 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Parsons BL,Mattoo AK
Wound-regulated accumulation of specific transcripts in tomato fruit: interactions with fruit development, ethylene and light. Plant Mol. Biol., 1991. 17(3): p. 453-64 [PMID:1715787] - Scharf KD, et al.
Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]
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