PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 228aa MW: 25375.3 Da PI: 6.8125

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g090790.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	100	149	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+W+AeIrdp + +r +lg+f tae+Aa+a+++ + +++ge Solyc02g090790.1.1 100 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFATAEDAARAYDKKAIEFRGE 149 8*****.******7.....337***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.512	99	156	IPR001471	AP2/ERF domain
SMART	SM00380	4.5E-36	99	162	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.4E-32	99	157	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.6E-22	100	158	IPR016177	DNA-binding domain
CDD	cd00018	3.15E-30	100	158	No hit	No description
PRINTS	PR00367	7.2E-11	100	111	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-11	100	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.2E-11	122	138	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MNRFRQDSLL EENNSYPLAH KLTENQELYY MVSALRHVVS GAGAGDVRAN GEAAQLLLEV 60 QNASGGSSST SANSMPRRSS INVELGKGKK RRRRNMKKEF RGVRQRPWGK WAAEIRDPHK 120 AQRLWLGTFA TAEDAARAYD KKAIEFRGEK AKTNFPISEY TARAVNDEIN KLASVVMEEE 180 RELLVQVLNG GDVAVNGENG SSIQNGDEDD FWETLEDDGL VKWICSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-21	98	157	4	64	ATERF1
3gcc_A	3e-21	98	157	4	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	93	KKRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g090790.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215355	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence
GenBank	AC233643	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
GenBank	AC233695	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233631.1	1e-167	ethylene-responsive transcription factor ERF071-like
TrEMBL	A0A3Q7FY90	1e-166	A0A3Q7FY90_SOLLC; Uncharacterized protein
STRING	Solyc02g090790.1.1	1e-167	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33710.1	2e-26	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc02g090790.1.1
Entrez Gene	101252051

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]