PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g090710.2.1
Common NameLOC101245902
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 527aa    MW: 59424.2 Da    PI: 8.363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g090710.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18167257199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k l++s+v++  ++ lp +f+++h    ++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l++ ++f 
  Solyc02g090710.2.1 167 FMKLLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESETGEEFEIKYIAEKTG----LSAGWRKYAAAHKLVEGDVLVFQLVEPTRF- 250
                         899********************99953..45567***************777777....***********************9876666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v v+r+
  Solyc02g090710.2.1 251 -KVYVIRA 257
                         .8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-22160258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-19162258IPR015300DNA-binding pseudobarrel domain
CDDcd100177.23E-25165256No hitNo description
SMARTSM010191.7E-21167258IPR003340B3 DNA binding domain
PfamPF023629.5E-16167257IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183167258IPR003340B3 DNA binding domain
PfamPF052663.4E-7401502IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MKIKVVHRSE PPNQERVSIP YPDMPKKEVF DEEQENQQLG TQEPEPEPDF AIPKMGDDNL  60
SLVDASIPIN SITPSTQTPI SSLLGKRRRK PKEMVDQIST IPFRKKRVFK KQSQSSNGVA  120
VAGCRSISTK LERATADGSG SATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF  180
WMGLPVPFCK NHLPRKDTPV ILESETGEEF EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL  240
VFQLVEPTRF KVYVIRANDL KEVDGALSLL NLDAPAKQSD AEGAIGNNIK KRQKKSLPLT  300
VVQKRRRKED LSKQLVPLEA QSGNDSDEVA SEILEGSRSS GLAVNFRDIK SLEEFQILVN  360
GVCIDSELPE HIRRKYYELC CSKNAFLHDR LLQGLHCKLV AGMIFEVVNI ADMVRACKLS  420
TPRKEFDKWE KSLKSFELLG MNVGFLRTRL RWLLSLAFDS EGASDTKRYW DAKKEWSRAE  480
DEIRNLEMKL EELKQASGKY VADVEALKSK AESYELMFQG EVNAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289307KKRQKKSLPLTVVQKRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.124900.0callus| flower| fruit| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g090710.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2336430.0Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
GenBankAC2336950.0Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
GenBankAF4118090.0Lycopersicon esculentum BAC clone FW2.2, complete sequence
GenBankGU0488970.0Solanum lycopersicum clone BAC CaCM699L14-Tomato, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232039.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A3Q7FY770.0A0A3Q7FY77_SOLLC; Uncharacterized protein
STRINGSolyc02g090710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-36B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]