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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g090410.2.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
LBD |
| Protein Properties |
Length: 316aa MW: 35131.5 Da PI: 7.0166 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g090410.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 134.7 | 3.5e-42 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrrkC+++Cv+apyfp +qp kf nvhk+FGasnv+kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++
Solyc02g090410.2.1 11 PCAACKFLRRKCTQECVFAPYFPPDQPLKFSNVHKVFGASNVSKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQQKLRQVQ 101
7****************************************************************************************** PP
DUF260 92 aelallkee 100
+l +++e
Solyc02g090410.2.1 102 DDLLNARKE 110
*99888776 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MKKRMSSTNS PCAACKFLRR KCTQECVFAP YFPPDQPLKF SNVHKVFGAS NVSKLLNELN 60
AAQREDAVNS LAYEAEYRLR DPVYGCVGLI SLLQQKLRQV QDDLLNARKE LSTYIGPAGM 120
LPIANLQPPG FFQPQQQPMN APSSSTMSPF NMNPMSGMST GVPHGGPLLI RDPQQQQQQQ 180
LLQQPIQVQQ FITAIAAKEQ RDQQEMLKYY EQQEQQEDAV RFNSGFDSTG SVTATGFHQM 240
SSSIPPSLVL AGTYENPYNL VPPHQQSQPE QSLSYQQQVH LQSQQQLQPP QPPETPRQQP 300
RANSEEEGRG SGPSG*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC226517 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0056J19, complete sequence |
| GenBank | AC232771 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0115F06, complete sequence |
| GenBank | AC232774 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0056J10, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Kim M,Kim MJ,Pandey S,Kim J
Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
Plant Cell Physiol., 2016. 57(11): p. 2291-2299
[PMID:27519310] - Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
Plant Mol. Biol., 2016. 92(6): p. 661-674
[PMID:27605094]
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