PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g089540.2.1
Common NameCO1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 392aa    MW: 43436.3 Da    PI: 5.7556
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g089540.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.5e-061253439
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        r+C+ +++   + +C+ ++ +lC+ C   +H        H++
  Solyc02g089540.2.1 12 RVCDSCHSATCTVYCRADSAYLCAGCDARIHTAslmasrHER 53
                        79*****************************55677777765 PP
2zf-B_box292.3e-095499342
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         ++C+ +e+ ++ + C+ +   lC++C   +H+       H +vp+
  Solyc02g089540.2.1 54 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 99
                        689*****************************66899999877775 PP
3CCT69.86.9e-24322365144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Solyc02g089540.2.1 322 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 365
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.783956IPR000315B-box-type zinc finger
SMARTSM003362.4E-8956IPR000315B-box-type zinc finger
CDDcd000211.00E-81256No hitNo description
PROSITE profilePS5011911.1215299IPR000315B-box-type zinc finger
PfamPF006432.6E-75399IPR000315B-box-type zinc finger
CDDcd000211.97E-95599No hitNo description
SMARTSM003363.7E-95799IPR000315B-box-type zinc finger
PROSITE profilePS5101716.638322364IPR010402CCT domain
PfamPF062038.8E-18322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLKKENSNNW ARVCDSCHSA TCTVYCRADS AYLCAGCDAR IHTASLMASR HERVWVCEAC  60
ERAPAAFLCK ADAASLCASC DADIHSANPL ARRHHRVPIM PIPGTIYGPP AVHTITGGSM  120
MIGGTTGEGT EDDGFLSLNQ DADDTTIDEE DEDEAASWLL LNPPVKNNNK NNNYGMLFGG  180
EVVDDYLDLA EYGGDSQFND QYSVNQQQQH YSVPQKSYVE DSVVPVQNGQ RKSLILYQTP  240
QQQQSHHLNF QLGMEYDNSN TGYGYPASLS HSVSISSMDV SVVPESAQSE TSNSHPRPPK  300
GTIDLFSGPP IQIPPQLTPM DREARVLRYR EKKKNRKFEK TIRYASRKAY AETRPRIKGR  360
FAKRTDVEAE VDQMFSTQLM TDSNYGIVPS F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.169620.0callus| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g089540.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4902510.0Lycopersicon esculentum CONSTANS 1 (CO1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233839.10.0CONSTANS 1
SwissprotQ965021e-129COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLQ2VY100.0Q2VY10_SOLLC; CONSTANS 1
STRINGSolyc02g089540.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.18e-93B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ben-Naim O, et al.
    The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA.
    Plant J., 2006. 46(3): p. 462-76
    [PMID:16623906]
  4. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]