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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g089520.1.1 |
Common Name | LOC101245415 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
CO-like |
Protein Properties |
Length: 410aa MW: 45676.6 Da PI: 4.8871 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g089520.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 22.4 | 2.5e-07 | 19 | 60 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
r+C+ + + +++C+ ++ +lC+dC +H H++
Solyc02g089520.1.1 19 RVCDSCRSVTCTIYCQADSAYLCADCDARIHAAslvtsrHKR 60
79******99*********************65777777775 PP
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2 | zf-B_box | 28 | 4.7e-09 | 60 | 104 | 2 | 40 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+ ++C+ +e+ ++ + C+ + lC++C +H+ H ++
Solyc02g089520.1.1 60 RVWVCEACERAPAAFLCKADAASLCASCDADIHSAnplahrHHRI 104
5689****************************9668888554444 PP
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3 | CCT | 69.7 | 7.3e-24 | 340 | 383 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
Solyc02g089520.1.1 340 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 383
9*****************************************87 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MLKKENSGGL DGSSNYWARV CDSCRSVTCT IYCQADSAYL CADCDARIHA ASLVTSRHKR 60 VWVCEACERA PAAFLCKADA ASLCASCDAD IHSANPLAHR HHRIPIITIP GTLYGPPAVE 120 TVGGDSMMIS GSTGEGTEDD GFLSLTQDAD DTIIDEEDED EDEAASWLLL NHPVKNNNKN 180 NVNNNNNQTN NYDMLFGGEV VDDYLDLAEY GGDSQFNDQY NVNQQQQQYF VPQMSYGGDS 240 VVPVQDGQGK PLIFYQQQQQ QQQSHHQNFQ LGMEYDNSNT RLGYPASMSH SVSVVSMDVS 300 VVPESALCET SNSQPRPQKG TIELFSGHPI QIPLLTPMDR EARVLRYREK KKNRKFEKTI 360 RYASRKAYAE TRPRIKGRFA KRTDVEAEVD QMFSTQLMTD SSYRIVPSF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. |
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G15840.1 | 2e-75 | B-box type zinc finger protein with CCT domain |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Mol. Biol. Evol., 2015. 32(9): p. 2284-301 [PMID:25972346]
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