PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc02g088670.1.1 | ||||||||
Common Name | LOC101264589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 461aa MW: 50937.2 Da PI: 5.7356 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.8e-06 | 119 | 139 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F++ L H+rtH Solyc02g088670.1.1 119 CKECGKEFPSMKALAGHLRTH 139 ********************9 PP | |||||||
2 | zf-C2H2 | 15 | 7.4e-05 | 148 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H Solyc02g088670.1.1 148 HICEKCGKGFVSMRALFGHMKVH 170 68*******************99 PP | |||||||
3 | zf-C2H2 | 14.2 | 0.00013 | 377 | 399 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C+k+F++ +L H r H Solyc02g088670.1.1 377 HKCPICSKVFPSGQSLGGHKRAH 399 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.085 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.5E-4 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0085 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.87E-11 | 118 | 170 | No hit | No description |
Pfam | PF13912 | 5.2E-8 | 118 | 141 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 119 | 147 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.907 | 148 | 175 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0015 | 148 | 170 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.001 | 148 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 148 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.44E-5 | 373 | 401 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 376 | 400 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 377 | 399 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 377 | 399 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 379 | 399 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 461 aa Download sequence Send to blast |
MEEPQGHKFI CKFCDKSCDS GKSLGGHMRG HLALISAAKN QKEEADGKMG SQEEEEAANT 60 HEDLSISGQS DGSMNQEKEN NISIGDDGDS VGYSLRENPR KSWRVSDLKI CSLETTNICK 120 ECGKEFPSMK ALAGHLRTHS KKGMEKCHIC EKCGKGFVSM RALFGHMKVH SKRLRVDNQD 180 SESKQSLSDF DTVCPIRKKR SKIKYKMDAS SSFSGLNESS SAISEVDEME EAARCLMMLS 240 SGVTDWDEYI SISENSTNEN VILESESLHC AKGISADAFT VKHLSHTVFS DSGCVDGYEK 300 NYEIAEFSDR LMLINTEITK VCYSTEMQFE NDPSSSVVMQ DLAFLNSCSV KNAGLNMGNS 360 QLGEIRTSPD PIKSKVHKCP ICSKVFPSGQ SLGGHKRAHY TGFTESKTKE TMVKKLDDVA 420 DNHKSFFDLN NPVIAMDGEE KDVELKLWWV ESGDALMMSS * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc02g088670.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC215476 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLm0025E22, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233667.1 | 0.0 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A3Q7FX21 | 0.0 | A0A3Q7FX21_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g088670.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6927 | 22 | 31 | Representative plant | OGRP14875 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-20 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc02g088670.1.1 |
Entrez Gene | 101264589 |
Publications ? help Back to Top | |||
---|---|---|---|
|