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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g087960.2.1 |
| Common Name | LOC101253245 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 293aa MW: 33059.8 Da PI: 6.6648 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g087960.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd lv v+++G+g+W+t++ + g++R+ k+c++rw +yl
Solyc02g087960.2.1 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTGLRRCSKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 47.4 | 4.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++ +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l
Solyc02g087960.2.1 67 RGSFSDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
899*******************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGLRRCS KSCRLRWTNY 60
LRPGIKRGSF SDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLRKLE 120
TSDLYSNDGH CLSKFNSTSR GQWERTLQAD INTAKQALQN ALSLDESSPI PDIGCYPFIK 180
QEAKMSTTTY ASSAENIAKL LKQWTRSEST NNSEQSKASS STQFSCNTTN NNAMTEYSSS 240
FEPSNSDQFS QATTPEAAGK FHGESKREMD DEIQLSVMLE SWLFDENDDL LI*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 4e-28 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-27 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-27 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 5e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 5e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC122544 | 0.0 | Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence |
| GenBank | AC226507 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0136C06, complete sequence |
| GenBank | EU161283 | 0.0 | Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
Expression patterns of myb genes from Antirrhinum flowers.
Plant Cell, 1991. 3(2): p. 115-25
[PMID:1840903]
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