PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g087860.2.1
Common NameStyle2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 93aa    MW: 10362.7 Da    PI: 10.1071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g087860.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.9e-0723591854
                        HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +  ++L++llP+ + + +s K s + +L+++++YI++L
  Solyc02g087860.2.1 23 ELVSKLQQLLPEiR-NRRSSKASASKVLQETCNYIRNL 59
                        56689*******77.899999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.518559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-82074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-82078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-42359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQSS TGSSRISDDQ IIELVSKLQQ LLPEIRNRRS SKASASKVLQ ETCNYIRNLN  60
RQVDDLSDRL SQLLSTIDAD SPEAAIIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Function -- GeneRIF ? help Back to Top
  1. Style2.1, the major quantitative trait locus is responsible for a key floral attribute (style length) associated with the evolution of self-pollination in cultivated tomatoes. The gene encodes a putative transcription factor that regulates cell elongation in developing styles. [STYLE2.1] [LO2]
    [PMID: 17962563]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g087860.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1612811e-156Solanum lycopersicum transcription factor style2.1 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234290.16e-57transcription factor style2.1
RefseqXP_006338463.16e-57PREDICTED: transcription factor PRE1-like
RefseqXP_015064311.16e-57transcription factor PRE1
RefseqXP_016561417.16e-57PREDICTED: transcription factor PRE1-like
SwissprotQ9LJX19e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FQB11e-55A0A1U8FQB1_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XHV21e-55A0A2G2XHV2_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3ACA11e-55A0A2G3ACA1_CAPAN; transcription factor PRE1-like
TrEMBLA0A2G3D9P41e-55A0A2G3D9P4_CAPCH; Transcription factor PRE5
TrEMBLB6CG441e-55B6CG44_SOLLC; Transcription factor style2.1
TrEMBLB6CG451e-55B6CG45_SOLPN; Transcription factor style2.1
TrEMBLM0ZLZ01e-55M0ZLZ0_SOLTU; Uncharacterized protein
STRINGSolyc02g087860.2.12e-56(Solanum lycopersicum)
STRINGPGSC0003DMT4000035872e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.14e-21bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Chen KY,Cong B,Wing R,Vrebalov J,Tanksley SD
    Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes.
    Science, 2007. 318(5850): p. 643-5
    [PMID:17962563]