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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g085600.1.1 |
| Common Name | LOC101251641 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GRAS |
| Protein Properties |
Length: 537aa MW: 59385.4 Da PI: 5.4884 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g085600.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 331.4 | 1.7e-101 | 175 | 535 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+ +a +++++s+++++++++++k++s++sPi+
Solyc02g085600.1.1 175 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------SARQTRSSSSSDVIQTIKSYKILSNISPIP 259
678*************************999************************......788899999999****************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
fs +taNqa+leav+g+ vH+iDfdi+ G++W++++++La+++ +++p lRiT+++++e + e + ++e+L++fA+el++ fe+
Solyc02g085600.1.1 260 MFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPILRITALVPEE--YAVESRLIRENLTQFARELNIGFEI 348
******************************************877666689***********66..99999******************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysal 267
++++ +++e l+++++++ +gE++aV l+ +++r + + +++ ++++sP+vvv+v++e + +++ sF + +++ le+ys+l
Solyc02g085600.1.1 349 DFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNELRRISPNVVVHVDSEglMGYGAMSFRQTVIDGLEFYSTL 430
**********************************98......3...48*******************87788******************* PP
GRAS 268 fdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
++sl +a+++ + ++++k+E+++l ++iv+++ + g++ ++Wr+++ +aGF+pv ls++a qa++ll +v+++g++v +++
Solyc02g085600.1.1 431 LESLeAANIGGGNcgDWMRKIENFVLFPKIVDMIGAVGRR-----GGGGSWRDAMVDAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQ 516
****88999999999**********************998.....999******************************************* PP
GRAS 356 gslvlgWkdrpLvsvSaWr 374
++++l+W+dr+Lv++SaWr
Solyc02g085600.1.1 517 AEMLLCWHDRALVATSAWR 535
******************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0048831 | Biological Process | regulation of shoot system development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 537 aa
Download sequence Send
to blast |
MKVPFSTNDN VSSKPLVNSN NSFTFPAATN GSNLCYEPKS VLELRRSPSP IVDKQIITTN 60
PDLSALCGGE DPLQLGDHVL SNFEDWDSLM RELGLHDDSA SLSKTNPLTH SESLTQFHNL 120
SEFSAESNQF PSPDFSFSDT NFPQQFPTVN QASFINALDL SGDIHQNWSV GFDYVDELIR 180
FAECFETNAF QLAHVILARL NQRLRSAAGK PLQRAAFYFK EALQAQLAGS ARQTRSSSSS 240
DVIQTIKSYK ILSNISPIPM FSSFTANQAV LEAVDGSMLV HVIDFDIGLG GHWASFMKEL 300
ADKAECRKAN APILRITALV PEEYAVESRL IRENLTQFAR ELNIGFEIDF VLIRTFELLS 360
FKAIKFMEGE KTAVLLSPAI FRRVGSGFVN ELRRISPNVV VHVDSEGLMG YGAMSFRQTV 420
IDGLEFYSTL LESLEAANIG GGNCGDWMRK IENFVLFPKI VDMIGAVGRR GGGGSWRDAM 480
VDAGFRPVGL SQFADFQADC LLGRVQVRGF HVAKRQAEML LCWHDRALVA TSAWRC*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC226001 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0116F10, complete sequence |
| GenBank | AC226504 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0106H06, complete sequence |
| GenBank | AF273333 | 0.0 | Lycopersicon esculentum clone BAC 19, complete sequence |
| Publications
? help Back to Top |
- Ku HM,Vision T,Liu J,Tanksley SD
Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.
Proc. Natl. Acad. Sci. U.S.A., 2000. 97(16): p. 9121-6
[PMID:10908680] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444]
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