PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 294aa MW: 33312.9 Da PI: 8.1131

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g085160.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.4	1.5e-32	90	145	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrYkeClkNhAa+lGg+++DGCgEfmps gee t + lkCaAC+CHRnFHR+e+e+e Solyc02g085160.1.1 90 VRYKECLKNHAANLGGYVLDGCGEFMPS-GEEETLEYLKCAACDCHRNFHRKETEDE 145 89***********************9.8888******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-21	90	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.1E-30	90	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.5E-29	91	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.206	92	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.7E-29	224	291	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.32E-18	225	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.3E-26	229	286	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEHRGQEKDM GLPNPNPMSY NPSQLNQQES SSSAANKFLT APNRTTNEHE NTIFSPNQTL 60 DQHNITQNSD PDPVRQLSTS SASERNITPV RYKECLKNHA ANLGGYVLDG CGEFMPSGEE 120 ETLEYLKCAA CDCHRNFHRK ETEDESQTPG VHRNNHRIPN QTPPSLPAVP TQQQHHHKYP 180 HSYPRGHMAP VMMSFGGNTG VAAESSSEDL NMFHGGQGVI QPCNFSASKK RFRTKFSQQQ 240 KDRMLEFAEK LGWRIQKQDE QEVHQFCNEV GVKRQVFKVW MHNSKQATKK KQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-22	228	285	16	73	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10259	0.0	flower\| fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00268	DAP	Transfer from AT2G18350	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g085160.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215363	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0030A21, complete sequence
GenBank	AC215378	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0074A14, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232414.1	0.0	zinc-finger homeodomain protein 6
Swissprot	Q9ZPW7	1e-66	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A3Q7F7J5	0.0	A0A3Q7F7J5_SOLLC; Uncharacterized protein
STRING	Solyc02g085160.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	5e-69	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Solyc02g085160.1.1
Entrez Gene	101261565

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]