PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 352aa MW: 39733.1 Da PI: 6.3441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g084880.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	5.9e-05	257	296	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq Solyc02g084880.2.1 257 VRKEKLGDRISALHRLVAPF-----GKTDTASVLTEAIGYIQFLQ 296 57778889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.71E-6	244	299	No hit	No description
PROSITE profile	PS50888	11.947	246	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-7	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-10	256	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDSTNLYNHH QLQQLAGYPF FSTGVSTLHD WNSGITSEEE YYYKLGHMKR ISSEELMWKR 60 GIDTFPLMNT SMFHDGHHES SNDPLDDKNN KAGYIISNDY FLKMKDMNSL SNNMFKESYF 120 ENEQQHAFDL NENLLSEDSY MNNANNSSYV SSHDMEYSDF QGLKLAFNGL TFKNSHDSNS 180 NCFGHFTTER MSSGFADGLQ ELTHSPSSKK ITSNVRKNIG VSSKAKRSAE DEANPCQEAS 240 KKSRVTSQSP STLMLKVRKE KLGDRISALH RLVAPFGKTD TASVLTEAIG YIQFLQDQIL 300 TLSMPYSKST ERKLHHINLK DSSIEAVLDL ESRGLCLVPT SFSSYISQSC D*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDSTNLYNHH QLQQLAGYPF FSTGVSTLHD WNSGITSEEE YYYKLGHMKR ISSEELMWKR  60
GIDTFPLMNT SMFHDGHHES SNDPLDDKNN KAGYIISNDY FLKMKDMNSL SNNMFKESYF  120
ENEQQHAFDL NENLLSEDSY MNNANNSSYV SSHDMEYSDF QGLKLAFNGL TFKNSHDSNS  180
NCFGHFTTER MSSGFADGLQ ELTHSPSSKK ITSNVRKNIG VSSKAKRSAE DEANPCQEAS  240
KKSRVTSQSP STLMLKVRKE KLGDRISALH RLVAPFGKTD TASVLTEAIG YIQFLQDQIL  300
TLSMPYSKST ERKLHHINLK DSSIEAVLDL ESRGLCLVPT SFSSYISQSC D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g084880.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232434.2	0.0	transcription factor bHLH110-like
TrEMBL	A0A3Q7F786	0.0	A0A3Q7F786_SOLLC; Uncharacterized protein
STRING	Solyc02g084880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13443	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc02g084880.2.1
Entrez Gene	101267471

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]