PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g083750.1.1 | ||||||||
Common Name | LOC101262473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GeBP | ||||||||
Protein Properties | Length: 422aa MW: 46854 Da PI: 4.4612 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 113.5 | 1.3e-35 | 116 | 217 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 klfqrlw +eDei lLqG++++++++g + ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hdq Solyc02g083750.1.1 116 KLFQRLWMDEDEIELLQGFLEYTTQRGGinsssHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPHDQ 206 579***********************987764334459***************************************************** PP DUF573 87 kifelskkiWg 97 +fe+s+kiW Solyc02g083750.1.1 207 ATFEISRKIWS 217 **********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.5E-33 | 118 | 217 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MASVEDQAVV YNDDDLDDEE DDEESGHPQN EAVVDEDDDV DVDEEEEEED DSTSSPPVPV 60 ANHSVAGEVT IAVVGVPATD SLCIEPKRER INDFGVTPAT MVVEEKKPLV LDDSRKLFQR 120 LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR 180 LKKKYRTVMS KMGSGKEFVF KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPADDGGF 240 DDEDSHLNLN HANFIDHTPN FNLNPNGFDV KTSKSKKRPR GGEEKPGYIQ QYYHQSSGGG 300 TNVILPPTPV SMAAPQATAT ATAAASIPSL IEETVRSCLS PIFKELFNNL NGSRYSGFGM 360 SLGPSPLVGF GNSLMSCDIN MKTDEKWRKQ QILELEVYSK RLELVQDQIK AQLEELRSMN 420 S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.13526 | 0.0 | flower| fruit| leaf| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g083750.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215352 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0009K06, complete sequence | |||
GenBank | AC215370 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0056D15, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232499.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A3Q7F8W3 | 0.0 | A0A3Q7F8W3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g083750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4052 | 24 | 45 | Representative plant | OGRP3184 | 10 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 3e-73 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g083750.1.1 |
Entrez Gene | 101262473 |
Publications ? help Back to Top | |||
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