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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g082040.2.1 |
Common Name | LOC101248351 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 325aa MW: 37149 Da PI: 7.901 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g082040.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l++ +k +G +W+++++ g+ R++k+c++rw +yl
Solyc02g082040.2.1 13 RGLWSPEEDEKLIKHIKTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60
788*******************************************97 PP
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2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
Solyc02g082040.2.1 66 RGCFSEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
899*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MGHHCCSKQK VKRGLWSPEE DEKLIKHIKT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF 120 DPNTHNLLST KKKANKNNYT KSSIFTIETS LSSSSTKELV SMDMIKASLA ALSTFPNYAN 180 NMSMPQYQTS LSRLYGSVCV PTTTNIIGNS NYASTIDYKK QSTVINEKCM WSFTGFETPQ 240 HEFGNGHEEM KQEAQVQVED KSCQEEVLYK VNDLHEFNHD GRRIAENVTF DEGSDFDFEF 300 MNSELVPRGI FTNIDSIDQL AWDC*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC215473 | 2e-67 | Solanum lycopersicum chromosome 2 clone C02SLm0020N15, complete sequence |