PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g081120.2.1 | ||||||||
Common Name | T6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 355aa MW: 39654.6 Da PI: 6.0029 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.9e-09 | 284 | 316 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++++ LA+++gL+++q+ +WF N+R ++ Solyc02g081120.2.1 284 PYPSESQKLALAESTGLDQKQINNWFINQRKRH 316 8*****************************885 PP | |||||||
2 | ELK | 41.2 | 3.6e-14 | 236 | 257 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Solyc02g081120.2.1 236 ELKGQLLRKYSGYLGSLKQEFM 257 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-19 | 93 | 137 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.6E-22 | 95 | 134 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.7E-26 | 146 | 197 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.6E-21 | 150 | 196 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.8E-8 | 236 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 236 | 256 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.8E-11 | 236 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.827 | 256 | 319 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-11 | 258 | 323 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-19 | 258 | 333 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 261 | 321 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.55E-12 | 268 | 320 | No hit | No description |
Pfam | PF05920 | 1.5E-17 | 276 | 315 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 294 | 317 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0005005 | anatomy | shoot axis internode | ||||
PO:0006011 | anatomy | lateral leaf vein | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020049 | anatomy | leaflet | ||||
PO:0020139 | anatomy | leaf midvein |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEGGSSGNTS TSCLMMMGYG DHENNNNNNG NGNGNGNGNV TICAPPMMMM MPPPPPSLTN 60 NNNAETSSNN ILFLPFMDNN NNNPQEDNNS SSSSIKSKIM AHPHYHRLLT AYLNCQKIGA 120 PPEVVARLEE ICATSATMGR SSSSSGGGII GEDPALDQFM EAYCEMLTKY EQELSKPFKE 180 AMVFLSRIEC QFKALTLAPN SSHESALGEA MDRNGSSDEE VDVNNSFIDP QAEDRELKGQ 240 LLRKYSGYLG SLKQEFMKKR KKGKLPKEAR QQLVDWWLRH IKWPYPSESQ KLALAESTGL 300 DQKQINNWFI NQRKRHWKPS EDMQFVVMDA AHPHYYMDNV LANHFPMDMT PSLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 260 | LKQEFMKKRK |
2 | 257 | 261 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.70 | 0.0 | callus| flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing lateral organs and developing ovaries in flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g081120.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226511 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0175O20, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233941.2 | 0.0 | homeobox protein knotted-1-like LET6 | ||||
Swissprot | O22299 | 0.0 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | Q9SAR2 | 0.0 | Q9SAR2_SOLLC; Knotted 2 protein | ||||
STRING | Solyc02g081120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6835 | 24 | 33 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-129 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g081120.2.1 |
Entrez Gene | 543520 |
Publications ? help Back to Top | |||
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