PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g079810.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23722.1 Da PI: 4.9463 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.4e-10 | 39 | 85 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++Er+RR+++ +++ +Lr+l+P+ + ++K +i + A+ YI++Lq Solyc02g079810.1.1 39 KNLKAERNRRQKLSERLLQLRSLVPNI-----TNMTKETIITDAITYIRELQ 85 56689*********************6.....58*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.67E-9 | 34 | 85 | No hit | No description |
SuperFamily | SSF47459 | 1.2E-14 | 35 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.443 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-13 | 38 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-8 | 39 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-9 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048656 | Biological Process | anther wall tapetum formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEFPSTPFDN SNNSEEREVG RRTDKRKQID GEVKEYKSKN LKAERNRRQK LSERLLQLRS 60 LVPNITNMTK ETIITDAITY IRELQMNVDN LSEQLLEMEA TQGEELETKN EEIIDTADEM 120 GKWGIEPEVQ VANIGPTKLW IKIVCQKKRG GLTKLMEAMN ALGFDINDTS ATASKGAILI 180 TSSVEVVRGG LTEANRIREI LLEIIHGIY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 26 | RRTDKRK |
2 | 20 | 27 | RRTDKRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00091 | SELEX | Transfer from AT4G21330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g079810.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885203.1 | 1e-151 | transcription factor DYT1 | ||||
TrEMBL | A0A1U8FSD1 | 1e-124 | A0A1U8FSD1_CAPAN; transcription factor DYT1-like | ||||
STRING | Solyc02g079810.1.1 | 1e-150 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9107 | 16 | 22 | Representative plant | OGRP10309 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 6e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g079810.1.1 |
Publications ? help Back to Top | |||
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