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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g079180.1.1 |
Common Name | LOC104645813 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 415aa MW: 47140.7 Da PI: 4.6757 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g079180.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 97.8 | 1.1e-30 | 93 | 185 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
F+ k+ye+l d ++k+lisws+ng+sf+++d+++fa +vLp++F+h+n++SFv QLn YgFkkv+ ++ eF+h+ F++gk +
Solyc02g079180.1.1 93 FVLKIYEMLADIQFKSLISWSNNGTSFIIHDNHKFAVDVLPRFFRHNNISSFVCQLNSYGFKKVSWDK---------FEFRHDCFQRGKGQ 174
9*****************************************************************99.........67************ PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
l++ikrk s+
Solyc02g079180.1.1 175 WLRNIKRKISK 185
*******9876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 415 aa
Download sequence Send
to blast |
METEGGKGKG KMTEIDDIVE ALGESYEGLE DVHIDISMLE YGDDNDDDNQ CDNRSNEVNH 60 GNAAAVAATP TTPRELFSSS SNRRNFQRRA SPFVLKIYEM LADIQFKSLI SWSNNGTSFI 120 IHDNHKFAVD VLPRFFRHNN ISSFVCQLNS YGFKKVSWDK FEFRHDCFQR GKGQWLRNIK 180 RKISKSQMNE QSTERQAIDE TVAFTMEKEI EEIRAEQVTM REEIMMLQRQ LDVLEKEMED 240 INQAGSNMSS KKAKICMILF NSLFACTRGI DSTEVAEEQG GEVEDGVENS GKGNRGKKRK 300 MLVVEELEGV NEGRKKGNPG KERKMQVIEE LEGDNEGRKK IADAADFKTG SYLGRMLMDE 360 MNLNNLDQEQ PDNFLESEEL AGSSTFWTDY VEKMDHKAIR GVDPALSQSQ EIPL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC215365 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0031A21, complete sequence |
GenBank | AC215402 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0161P02, complete sequence |