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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g078340.2.1 |
Common Name | LOC101246888 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 206aa MW: 24239.7 Da PI: 9.8251 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g078340.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 104.1 | 1.2e-32 | 26 | 123 | 2 | 102 |
HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
HSF_DNA-bind 2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86
Fl+k+y++le ++++ +++sw+ +gn fvv+ ++ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++ weF+h +F
Solyc02g078340.2.1 26 FLSKTYDLLEeqeeenSNRNIKVVSWNGEGNGFVVWCPDEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFHHGKF 107
9*********5554433366789************************************************999.........******** PP
XXXXXXXXXXXXXXXX CS
HSF_DNA-bind 87 kkgkkellekikrkks 102
+kg ++ll +i rkk
Solyc02g078340.2.1 108 QKGCRHLLAEITRKKC 123
*************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 206 aa
Download sequence Send
to blast |
MATDDNRNIH RKIGRSTTRT KCPAPFLSKT YDLLEEQEEE NSNRNIKVVS WNGEGNGFVV 60 WCPDEFSEVM LPKYFKHNNF SSFIRQLNTY GFKKVASKRW EFHHGKFQKG CRHLLAEITR 120 KKCEPSVFPT YLNPSKKSTL LLATNNNDQE NTITRQHLME ENQNLKKERM ELQMQIAHFK 180 TLEMKLLQCL SQCVENPHNK TRRLF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5hdk_A | 7e-16 | 22 | 121 | 7 | 110 | Heat shock factor protein 2 |
5hdk_B | 7e-16 | 22 | 121 | 7 | 110 | Heat shock factor protein 2 |
5hdk_C | 7e-16 | 22 | 121 | 7 | 110 | Heat shock factor protein 2 |
5hdk_D | 7e-16 | 22 | 121 | 7 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC226513 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0005F12, complete sequence |