PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g077610.2.1
Common NameLOC101264084
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 293aa    MW: 33097.4 Da    PI: 8.8762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g077610.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.29.5e-34561961128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                         lp+G++F+P+d e++ e+L++kv +++++++        +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++    
  Solyc02g077610.2.1  56 LPAGVKFDPSDGEIL-EHLEAKVLSDNHKIHPliddfilTIDGQnGICYTHPQKLP-GVNKDGQVRHFFHRPSKAYTTGTRKRRKVHteid 144
                         799***********9.99*****99995553344444433665546**********.667777888******************7444466 PP

                 NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v+  +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Solyc02g077610.2.1 145 ggETRWHKTGKTRPVYI-SGVVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 196
                         55778************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-3849215IPR003441NAC domain
PROSITE profilePS5100532.8356215IPR003441NAC domain
PfamPF023652.7E-1457196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAWCSQSTVL PIISSSDQEN NVIMVTSKTR FITCPSCGHN IQLQHQRGIL HDLPGLPAGV  60
KFDPSDGEIL EHLEAKVLSD NHKIHPLIDD FILTIDGQNG ICYTHPQKLP GVNKDGQVRH  120
FFHRPSKAYT TGTRKRRKVH TEIDGGETRW HKTGKTRPVY ISGVVKGYKK ILVLYTNYGR  180
QRKPEKTNWV MHQYHLGENE EEKDGELVVS KVFYQTQPRQ CGSSTIKKTI DHSNNIINPL  240
LKTTNFVDYY NPNPFVSYNV ESQSSPHELI QNLVVHGDGS SFVIPSEASK EK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.225410.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g077610.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316779.10.0NAC domain-containing protein 73
RefseqXP_025885167.10.0NAC domain-containing protein 73
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A3Q7FQE60.0A0A3Q7FQE6_SOLLC; Uncharacterized protein
STRINGSolyc02g077610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]