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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc02g077610.2.1 |
| Common Name | LOC101264084 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
NAC |
| Protein Properties |
Length: 293aa MW: 33097.4 Da PI: 8.8762 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g077610.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 108.2 | 9.5e-34 | 56 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79
lp+G++F+P+d e++ e+L++kv +++++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++
Solyc02g077610.2.1 56 LPAGVKFDPSDGEIL-EHLEAKVLSDNHKIHPliddfilTIDGQnGICYTHPQKLP-GVNKDGQVRHFFHRPSKAYTTGTRKRRKVHteid 144
799***********9.99*****99995553344444433665546**********.667777888******************7444466 PP
NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++v+ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l
Solyc02g077610.2.1 145 ggETRWHKTGKTRPVYI-SGVVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 196
55778************.999***********66589**************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MAWCSQSTVL PIISSSDQEN NVIMVTSKTR FITCPSCGHN IQLQHQRGIL HDLPGLPAGV 60
KFDPSDGEIL EHLEAKVLSD NHKIHPLIDD FILTIDGQNG ICYTHPQKLP GVNKDGQVRH 120
FFHRPSKAYT TGTRKRRKVH TEIDGGETRW HKTGKTRPVY ISGVVKGYKK ILVLYTNYGR 180
QRKPEKTNWV MHQYHLGENE EEKDGELVVS KVFYQTQPRQ CGSSTIKKTI DHSNNIINPL 240
LKTTNFVDYY NPNPFVSYNV ESQSSPHELI QNLVVHGDGS SFVIPSEASK EK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Plant Physiol., 2008. 147(3): p. 1004-16
[PMID:18467456] - Sakamoto S,Mitsuda N
Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
Plant Cell Physiol., 2015. 56(2): p. 299-310
[PMID:25535195] - Jervis J, et al.
A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
Phytochemistry, 2015. 115: p. 112-20
[PMID:25771508]
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