PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g077450.2.1 | ||||||||
Common Name | LOC101266385 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | VOZ | ||||||||
Protein Properties | Length: 468aa MW: 52082.3 Da PI: 5.0769 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 409 | 8.9e-126 | 187 | 406 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlq...dycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 pppsaflgpkcalwdc+rpa gs+w+q dycs +ha+la neg +g pv+rp g++lkd+llf+alsak++gk+vg+pec gaataks Solyc02g077450.2.1 187 PPPSAFLGPKCALWDCPRPAMGSDWCQkshDYCSDYHAALAPNEGYLGRPPVVRPMGVGLKDSLLFQALSAKAHGKDVGVPECRGAATAKS 277 89***********************976668************************************************************ PP VOZ 89 pwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179 pwna+elfdl+++egetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqv++++gglkrsyymdpqp++++ewhlyeyein++da Solyc02g077450.2.1 278 PWNAPELFDLEVVEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVINDYGGLKRSYYMDPQPMKNLEWHLYEYEINKYDA 368 ******************************************************************************************* PP VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217 alyrlelklvd+kks+kgkv+++s+adlqk++grl+a Solyc02g077450.2.1 369 WALYRLELKLVDGKKSPKGKVMNESVADLQKQMGRLSA 406 ************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MGKGSKNGAL FKDKAKNRVD DLQGMFMNLQ SARKESRTHD AGLLEEQVHQ MLREWKAELN 60 EPSPASSLQG GSRISSDLYR LLHGEEEDDA TSALAAPKPE PDAQKQDVAG FQEDFNATPV 120 MQEQGYQLDD ECKNTPLAVN NAGINNEGVA TQLDYHSFDL QQDFDQFGFD ALNLCLEENL 180 SPIQISPPPS AFLGPKCALW DCPRPAMGSD WCQKSHDYCS DYHAALAPNE GYLGRPPVVR 240 PMGVGLKDSL LFQALSAKAH GKDVGVPECR GAATAKSPWN APELFDLEVV EGETIREWLF 300 FDKPRRAFES GNRKQRSLPD YNGRGWHESR KQVINDYGGL KRSYYMDPQP MKNLEWHLYE 360 YEINKYDAWA LYRLELKLVD GKKSPKGKVM NESVADLQKQ MGRLSADIPL ENKRSVKGRG 420 KANSKDVVTN GPPAPNQTVP AIEGFDYVAG APFPDYLVDN IGGYYIT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.7408 | 0.0 | cell culture| floral bud| flower| fruit| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g077450.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232932.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_010316788.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A3Q7F3H4 | 0.0 | A0A3Q7F3H4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g077450.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2818 | 24 | 54 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g077450.2.1 |
Entrez Gene | 101266385 |
Publications ? help Back to Top | |||
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