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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g077360.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 30015.5 Da PI: 4.6914 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 113 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa a+++a+++++g Solyc02g077360.1.1 113 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFSTAEEAAMAYDKAALRIRG 163 6********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-23 | 113 | 173 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-14 | 113 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 113 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.74E-32 | 113 | 172 | No hit | No description |
SMART | SM00380 | 2.0E-37 | 113 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 113 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MTTHHVENNN QEQDQVACEE ILENVWANFI SKNDQNSQKV TNEYCCEQYW EQLPILERLP 60 SLGRWISMGA ETWEDILNGI IIPSHNNENS NDESTCKDVV NVEKKEEKKK MVHYRGVRRR 120 PWGKYAAEIR DSSRKGARVW LGTFSTAEEA AMAYDKAALR IRGPKAYLNF PHEMVAQAIG 180 ISNGPCEKEW TFSSSSQYNS RKRVSRDWNM YENLDEINQL PMEKKIMRSM EEDLFNDLDI 240 LEFEDLGSDY LDSLLSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 113 | 171 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 120 | KKEEKKKMVHYRGVRRRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g077360.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233843.2 | 0.0 | ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A3Q7F5C0 | 0.0 | A0A3Q7F5C0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g077360.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11237 | 18 | 23 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 5e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g077360.1.1 |
Publications ? help Back to Top | |||
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