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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g077250.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 355aa MW: 40345.5 Da PI: 5.2792 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.5 | 8.6e-33 | 115 | 215 | 1 | 94 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s ++++ + s ++++s+ Solyc02g077250.2.1 115 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPQKMQYSFDQEQSPef 205 589***********************************************************99944444333455555555554444433 PP TCP 89 ....kaaksa 94 + +++ Solyc02g077250.2.1 206 sqenRGVPNS 215 3332222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.4E-31 | 116 | 210 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.013 | 118 | 176 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MSEECTKCTS VIFIYFFPLG PRCMKMNHQF QVSDEEDGSE EEEEEEEEVF QENDIGNLQS 60 HYQNQQMPQS LCKKPEKWAN FTVSEQELNK GTRRMKPKRA KTDVIEGHGG RIIRATGRKD 120 RHSKVSTAKG PKDRRVRLSP NTAIQFYDVQ DRLGYDRPSK AIDWLIKEAK AAIDALGEFP 180 NNFHSTKLNP QKMQYSFDQE QSPEFSQENR GVPNSECGVQ DNQQEVNYDI PNLFSSSDGF 240 KIPFLSDLQS HPHGHFLNFQ SLQDDTVLSS GNHHQGRFFT TTSVNHFPSV LSQNQVFSHR 300 EPLQSSFFPL MSDPLSTQLE TLSYGFSNDG FSGIISSASR IQGEEEQATF FTAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 123 | 176 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 123 | 176 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 98 | RRMKPKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g077250.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ496320 | 0.0 | Solanum lycopersicum TCP transcription factor 1 (TCP1) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233783.1 | 0.0 | TCP transcription factor 1 | ||||
TrEMBL | K4B8V2 | 0.0 | K4B8V2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g077250.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-36 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g077250.2.1 |
Publications ? help Back to Top | |||
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