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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g072060.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 340aa MW: 38413.1 Da PI: 7.9591 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g072060.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 87.2 | 2.2e-27 | 40 | 130 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl k+ye+++d+e++ l++w++++++f+++d+++f +vLpkyFkhsn++SF+ QLn Y F+kv + + e+ +++F++gkk+
Solyc02g072060.1.1 40 FLVKTYEMVDDPETDPLVHWTSSKTTFLITDPNKFCVEVLPKYFKHSNLSSFIYQLNNYRFRKVCSYK---------CEYGNPWFRAGKKH 121
9****************************************************************999.........67************ PP
XXXXXXXXX CS
HSF_DNA-bind 93 llekikrkk 101
l++ik +
Solyc02g072060.1.1 122 WLKNIKSRI 130
******986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MEINIQENGG KGGRGRRGGG AVGRGRPRLT GLRGNSPPPF LVKTYEMVDD PETDPLVHWT 60 SSKTTFLITD PNKFCVEVLP KYFKHSNLSS FIYQLNNYRF RKVCSYKCEY GNPWFRAGKK 120 HWLKNIKSRI QLSKENNTQQ GSHSPRVDLV SNNLEEELEK LRNDHISLRV ELQKLKDGQE 180 NMRSFFPMLP GCGKEKEIRN IMKLLLEKSE VRGDSSSDDT TKRTRLVESP DRVAGSVQDG 240 IGQTSNSAGG SVSSNEKQKE EATARNAKNR EFWEKLFEDE SESKNEGAEE SEQELNRLKA 300 MAKIEEMVES KIAMEGESLI AKAAASLNDE TEAYLQLWT*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5d5u_B | 1e-20 | 38 | 130 | 27 | 130 | Heat shock factor protein 1 |
5d5v_B | 1e-20 | 38 | 130 | 27 | 130 | Heat shock factor protein 1 |
5d5v_D | 1e-20 | 38 | 130 | 27 | 130 | Heat shock factor protein 1 |
5hdg_A | 6e-21 | 38 | 130 | 8 | 111 | Heat shock factor protein 1 |
5hdn_A | 6e-21 | 38 | 130 | 8 | 111 | Heat shock factor protein 1 |
5hdn_B | 6e-21 | 38 | 130 | 8 | 111 | Heat shock factor protein 1 |
5hdn_C | 6e-21 | 38 | 130 | 8 | 111 | Heat shock factor protein 1 |
5hdn_D | 6e-21 | 38 | 130 | 8 | 111 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC226521 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLm0096H01, complete sequence |