|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc02g072000.2.1 |
Common Name | LOC101249882 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
HSF |
Protein Properties |
Length: 409aa MW: 46168.6 Da PI: 5.0924 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g072000.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 111.8 | 4.6e-35 | 14 | 106 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkk 91
F+ k+ye+++d++ + ++sws+n++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+
Solyc02g072000.2.1 14 FIAKTYEMVDDPSCDAIVSWSSNNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEGnFIRGQP 95
9****************************************************************999.........*****988****** PP
XXXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkks 102
+ll++i+r+k
Solyc02g072000.2.1 96 NLLKNIHRRKP 106
********985 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000302 | Biological Process | response to reactive oxygen species |
GO:0010200 | Biological Process | response to chitin |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MDEASCSTNA LPPFIAKTYE MVDDPSCDAI VSWSSNNKSF IVWNPPDFAR DLLPRYFKHN 60 NFSSFIRQLN TYGFRKIDPE KWEFANEGNF IRGQPNLLKN IHRRKPVHSH SAQNLHGLSS 120 PLTESERQGY KEDIQKLMHE NGSLHLDLQR HKQDHQGLEL QMQVLTERVQ HAEHRQKTMI 180 SALAQTLDRP VMDLSHMPQL QVNDRKRRFP GNSCLYNESD LEDMRGISSR ALSRENMNPS 240 SLLTMNAELL DQLESSLTFW EDVLQDVDQA GMRPNCLLQL DESTSCADSP AISYTQLNID 300 VGPKASGIDM NSEPNANIMP EVAEPEDKAA VAGTSTNVPT GVNDLFWEQF LTENPGSVDA 360 PEVQSERKDI GSKKNESKPV DSGKYWWNMK SVNSLAEQMG HLTPAEKT*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC226521 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLm0096H01, complete sequence |