PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g069830.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 92788.9 Da PI: 6.4244 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.4e-18 | 13 | 71 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r +L +++ +++ +q+kvWFqNrR +ek+ Solyc02g069830.2.1 13 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 71 6789*****************************************************97 PP | |||||||
2 | bZIP_1 | 22.1 | 3.3e-07 | 65 | 106 | 18 | 59 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v+ l Solyc02g069830.2.1 65 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 106 9*************************************9977 PP | |||||||
3 | START | 169.6 | 2.1e-53 | 162 | 368 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e++ ka+ ++ Wv++ +++g+e++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ ++l+vi +g g+ Solyc02g069830.2.1 162 IAEETLTEFLGKATGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDILNVIPTGngGT 251 6899******************************************************.8888888888********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++ p s+vRa++lpSg+li+p+++g+s +++v+h+dl++ ++ Solyc02g069830.2.1 252 IELIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGGPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLDACSV 342 **********************************************9999999************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXX CS START 178 hwllrslvksglaegaktwvatlqrq 203 +++lr+l++s+ + ++k ++a++++ Solyc02g069830.2.1 343 PEVLRPLYESSKILAQKLTMAAFRYI 368 *********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.418 | 8 | 72 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-15 | 10 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.24E-16 | 13 | 73 | No hit | No description |
Pfam | PF00046 | 2.2E-15 | 13 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-17 | 13 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-18 | 15 | 71 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.10E-5 | 65 | 101 | No hit | No description |
PROSITE profile | PS50848 | 25.976 | 152 | 380 | IPR002913 | START domain |
CDD | cd08875 | 3.24E-70 | 156 | 372 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.8E-19 | 160 | 343 | IPR023393 | START-like domain |
SMART | SM00234 | 4.9E-50 | 161 | 371 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.02E-33 | 162 | 373 | No hit | No description |
Pfam | PF01852 | 7.1E-51 | 162 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 1.9E-46 | 696 | 841 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MHKDCNKEMD SSKYVRYTPE QVEALERVYA ECPKPTSLKR HQLIRECSIL SNIDPKQIKV 60 WFQNRRCREK QRKEASHLQT VNRKLTAMNK LLMEENDRLQ KHVSHLVYDN GFMRQQLHTV 120 NSTTTDTCCE SVVVSGQQQQ QNPMPQHHPQ RDANSPAGLL AIAEETLTEF LGKATGTAVD 180 WVQMIGMKPG PESIGIVAVS RNCNGVAARA CGLVSLEPMK VAEILKDRPS WYRDCRCLDI 240 LNVIPTGNGG TIELIYLQTY APTTLAPARD FWTLRYTTSL EDGSLVICER SLTSNTGGPV 300 GPPATSSVRA KMLPSGFLIR PCEGGGSIIH IVDHIDLDAC SVPEVLRPLY ESSKILAQKL 360 TMAAFRYIRQ IAQETSGEIQ YAGGRQPAVL RAFSQRLCRG FNNAVSGFID DGWTIMGSDG 420 VDDVTIAVNS SPSKFLDAQY NTLSILPTFG GVLCARASML LQDVCPALLV RFLREHRSEW 480 ADYGVDAYSS ASLKASPYAV PCARPGVFPS SQVILPLAQT VEHEEFLEVV RLEGHAFSPE 540 DIALSRDMYL LQLCSGVEEN ATGACAQLVF AHIDESFGDD APLLPSGFSV IPLEPKSDSP 600 SAARTLDLAS TLEARTGGTR PAGEVEGSSY NHRSVLTIAF QFAFENHYRE NVAAMARQYV 660 RSIVGSVQRV AMAIAPSRLC SQLTPKSFPG SPEAVTLARW ICRSYKNHTG GELLQMDSQA 720 AGDAVLKQLW HHTDSIMCCS VKMNDSAFFS FANQAGLDML ETTLIALQDI MLDKILDEAG 780 RKVLLSEFPK IMQQGFAYLP AGLCVSSMGR PVSYEQAVAW KVLNDDNSNH CLAFMFTNWS 840 FI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6972 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the youngest stages of ovule development, predominantly to the adaxial side of the ovule primordium. Later, expression becomes restricted to a region in the distal chalaza. When the integuments initiate, expressed in the inner integument, with highest expression in the inner layer of the inner integument. Expressed in the vegetative shoot apical meristem (SAM) and initially throughout the presumptive cotyledons. At the globular stage, just before cotyledon outgrowth, expressed at high levels in cotyledon adaxial domains. Expression is lost from the SAM of torpedo stage embryos but is regained late in embryogenesis, extending to young primordia after germination, and becoming progressively restricted to the adaxial domain and the vasculature. Preferentially expressed in the adaxial domain of the developing leaf. Expressed throughout the plastochron 0 (P0) leaf primordium and expression increases in P1 to become preferentially localized to the adaxial leaf domain by the P2 stage (polar expression). {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the center of the meristem and on the adaxial side of the leaves. {ECO:0000269|PubMed:11395776}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g069830.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215403 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0162I09, complete sequence | |||
GenBank | AC215429 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0228I09, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233170.1 | 0.0 | homeobox-leucine zipper protein ATHB-14 isoform X2 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | M1BWB2 | 0.0 | M1BWB2_SOLTU; Uncharacterized protein | ||||
STRING | Solyc02g069830.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g069830.2.1 |