PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g068200.1.1

Common Name

SlBRC1a-like

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 273aa MW: 29061.5 Da PI: 8.8696

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g068200.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.3	4.5e-37	35	131	6	89
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++ s s+ Solyc02g068200.1.1 35 PKRKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAASVSQQGISVSAglmiesga 125 678**************************************************************88866666666552222245554443 PP TCP 89 .....k 89 Solyc02g068200.1.1 126 niagsG 131 333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.2E-32	36	141	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.256	37	91	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDPKQANHNN IKPTHDQIKE LQILKNDETN KVAAPKRKDR HTKVEGRGRR IRMPALCAAR 60 IFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGTGTIPAS ALAAAASVSQ QGISVSAGLM 120 IESGANIAGS GSSRSSNSRT NWPMICGNFG RPHLATAGMW PAPAPVVTSF GFQSSSAPSS 180 ASLGSDSSNY YLQKIGFPGF DLPAATSMNP MCFTSILGGS NQQLPGLELG LSQEGHLGVL 240 NQIYQQARMQ HPQQQHQQQQ QSPEEDSQGS GH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.2466	0.0	flower\| fruit\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g068200.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
BioGRID	Solyc02g068200.1, Solyc05g007420.1, Solyc06g070900.2, Solyc03g006800.1, Solyc08g080150.1, Solyc06g065190.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215395	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0146O12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234590.2	0.0	TCP transcription factor BRC1a-like
Swissprot	Q9LSD5	5e-66	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A3Q7F1A0	0.0	A0A3Q7F1A0_SOLLC; Uncharacterized protein
STRING	Solyc02g068200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-58	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc02g068200.1.1
Entrez Gene	100736459

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607] Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]