 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Solyc02g067760.2.1 |
| Common Name | LOC101258522 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
MYB |
| Protein Properties |
Length: 196aa MW: 22413.9 Da PI: 6.3581 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc02g067760.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl
Solyc02g067760.2.1 14 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
Solyc02g067760.2.1 67 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 110
7999******************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:0080086 | Biological Process | stamen filament development |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MDKICNSQDV EVRKGPWTME EDLILINYIA NHGEGVWNSL AKSAGLKRTG KSCRLRWLNY 60
LRPDVRRGNI TPEEQLLIME LHAKWGNKWS KIAKHLPGRT DNEIKNYWRT RIQKHIKQGE 120
NMNGQGSSEQ NIDHQEGSSS QISSVGQADN IETYSPTSYN GNLDTNFQAS NFLNETNDNM 180
WSMEDIWSMQ LLNGD*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}. |
| Uniprot | TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Function -- GeneRIF ? help
Back to Top |
- Jasmonic acid facilitates flower opening and floral organ development through the upregulated expression of SlMYB21 transcription factor in tomato. [SlMYB21]
[PMID: 29448919]
|
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
Expression patterns of myb genes from Antirrhinum flowers.
Plant Cell, 1991. 3(2): p. 115-25
[PMID:1840903] - Niwa T, et al.
Jasmonic acid facilitates flower opening and floral organ development through the upregulated expression of SlMYB21 transcription factor in tomato.
Biosci. Biotechnol. Biochem., 2018. 82(2): p. 292-303
[PMID:29448919]
|
