PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g067320.1.1 | ||||||||
Common Name | LOC101268060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 332aa MW: 36516.5 Da PI: 7.9437 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105 | 4.6e-33 | 53 | 110 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAa+lG+havDGCgEf+p + ++ +++++lkCaACgCHRnFHRre+ee Solyc02g067320.1.1 53 VVVYKECLKNHAANLGTHAVDGCGEFLPIPAANpADPTSLKCAACGCHRNFHRREPEE 110 589***************************9999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-27 | 54 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-21 | 56 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.905 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-29 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.13E-16 | 180 | 247 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 184 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.9E-25 | 190 | 246 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MELNINTNTT AAITTVKTPE LAETETPSRI QQPKPFSFSN GVLKRKNHHH PVVVVYKECL 60 KNHAANLGTH AVDGCGEFLP IPAANPADPT SLKCAACGCH RNFHRREPEE PPPIATAAIE 120 YQPHHRHHPP PPRGDHGSPN SPSPPPISSA YYPASAPHML LALSAGFSGE KNQNLPTSTT 180 PMAVANSNGR KRFRTKFTPD QKIKMLEFAE KVEWKMQKRD EDLVNNFCNE IGVEKGVLKV 240 WMHNNKTTSI SGKKLDQPNT DNGHNHQNGN SNYTVNGFCI VDRNNTTHHH DNTDSEFHIH 300 HESSMNDDNK KENSSFGANN VVVTNGSSSS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-18 | 191 | 251 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.10165 | 0.0 | callus| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g067320.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209589 | 5e-10 | Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0145P19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233362.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 6e-69 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A3Q7F010 | 0.0 | A0A3Q7F010_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g067320.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 8e-61 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g067320.1.1 |
Entrez Gene | 101268060 |
Publications ? help Back to Top | |||
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