PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 301aa MW: 34110.2 Da PI: 5.3546

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g067020.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.7	1.6e-19	18	68	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Solyc02g067020.1.1 18 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 68 589*****.7*****33....35********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.41E-32	18	75	No hit	No description
SuperFamily	SSF54171	6.41E-20	19	77	IPR016177	DNA-binding domain
SMART	SM00380	7.5E-38	19	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.638	19	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.1E-28	19	76	IPR001471	AP2/ERF domain
Pfam	PF00847	4.3E-14	19	68	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-8	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-8	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGRKRKAEGL MKIQRPRKKF VGVRQRPSGR WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD 60 EAACLLRGPN TRTNFWTSSS PSSNSALPQK ITKLLLSRLR EQNKSAAAAA ADSSSSTTSL 120 AEIDHQQQKQ QEKIGNRVVD FSDSLYTDYL NYPEDNVTEN NVIAPITREL TSIVQNQEIN 180 FQPVNNYEII EIGEAINIDV EDIESDIDFQ FRFSPFDLAE ELSMDFGEET SIVSEAMRRM 240 NYERKFSASL YAFNGITECL KLKMKSGGVT RSDQLSRIQN ACKRNLVKER ENEERNAGND 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-14	19	75	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g067020.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215360	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0025N15, complete sequence
GenBank	AC215414	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0190N21, complete sequence
GenBank	AC215433	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0280E02, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233928.1	0.0	ethylene-responsive transcription factor ERN1-like
TrEMBL	A0A3Q7F016	0.0	A0A3Q7F016_SOLLC; Uncharacterized protein
STRING	Solyc02g067020.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4310	20	37
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	2e-22	related to AP2 11

Link Out ? help Back to Top
Phytozome	Solyc02g067020.1.1
Entrez Gene	101254972

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]