|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc02g065730.1.1 |
Common Name | LOC101252456 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
MIKC_MADS |
Protein Properties |
Length: 235aa MW: 27368.1 Da PI: 10.1154 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g065730.1.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.2 | 4.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKK +E+SvLCdaeva+i+fss+gkl+eys+
Solyc02g065730.1.1 9 KRIENKISRQVTFSKRRSGLLKKTNEISVLCDAEVALIVFSSNGKLFEYST 59
79***********************************************96 PP
|
2 | K-box | 94.1 | 2.3e-31 | 78 | 171 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+l+++ e+++ e+ kL +++e Lqr++Rh++GedL+ +l+e + Le+qL+++lk++RskKn+l++e+i++lqkkekelq++n+ +++k
Solyc02g065730.1.1 78 MNLNTTYKENWTLEYPKLMARVELLQRNIRHFMGEDLDAFNLREFRGLEKQLDTALKRVRSKKNQLMHESISQLQKKEKELQQRNNLISNK 168
34788899*********************************************************************************99 PP
K-box 98 lee 100
l+e
Solyc02g065730.1.1 169 LKE 171
986 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.65E-41 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-25 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.228 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTNEISVLCD AEVALIVFSS NGKLFEYSTQ 60 SSMENILERY ENYSYEEMNL NTTYKENWTL EYPKLMARVE LLQRNIRHFM GEDLDAFNLR 120 EFRGLEKQLD TALKRVRSKK NQLMHESISQ LQKKEKELQQ RNNLISNKLK ENEKKQIVQT 180 NPGQSSTMTF LLQSPTVTNQ TIGGPSQATD QSQNRDGYNS LMPPWMFHHV HNKG*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
|