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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g065350.2.1 |
Common Name | LOC101260398 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
B3 |
Protein Properties |
Length: 332aa MW: 38191.4 Da PI: 5.9566 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g065350.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 47.1 | 4.2e-15 | 31 | 112 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
++++rl++pk fa+++ ++ + + le ++g++Wev+l + + g+++l++GWk+F + ++ g f++F ++ rs f +v++f+
Solyc02g065350.2.1 31 HELCRLRIPKGFASRYCKNILN--PVYLEVPNGEVWEVEL--EHSEGHIWLAEGWKDFSDYYSIRRGNFFMFGYNARSHF--NVTIFD 112
46799***********544334..5***************..999999**************************999999..998886 PP
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2 | B3 | 56.8 | 4.2e-18 | 233 | 314 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
+ ps+v+k + l++p kfa+ + + +s l+l+ + sW+vk+ + +k+ + t GWk Fv +n+Lk gD++vF+++++++
Solyc02g065350.2.1 233 FMHPSYVSKPHALYIPLKFARMYLMR--NSGNLVLRVPGKGSWSVKCVMLRKDAK--VTCGWKAFVLDNKLKYGDVCVFEVINDTK 314
5789*******************545..3447***************77777655..79*********************987644 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MVNKFRRQIG KVSSISYTSQ PKFCKIIFSP HELCRLRIPK GFASRYCKNI LNPVYLEVPN 60 GEVWEVELEH SEGHIWLAEG WKDFSDYYSI RRGNFFMFGY NARSHFNVTI FDFSAAEIEY 120 PPAEIESDDS IDISDVVEYS SEYLSHDPLV KERKRIRQEG EEENDIPVER QTIVIDEEES 180 QLNVVSLVIS EDCEEQQSNI VTSKRKEERD EGTADNYQRA KAFKSKNPFI VSFMHPSYVS 240 KPHALYIPLK FARMYLMRNS GNLVLRVPGK GSWSVKCVML RKDAKVTCGW KAFVLDNKLK 300 YGDVCVFEVI NDTKLSLIDV TIFPGISDGT N*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 1e-14 | 213 | 323 | 28 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-14 | 213 | 323 | 28 | 140 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC215404 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0163K16, complete sequence |