PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g065340.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 279aa MW: 32295.9 Da PI: 10.3935 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.7 | 1.7e-12 | 187 | 264 | 13 | 93 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 s +++pk+fa g+ k k+++l + +g++W++ i +++r+++++GW +F n++ g ++ Fkl+++++ e+ Solyc02g065340.1.1 187 SFFMTIPKSFAIWTGITK--MKKMRLVNGNGNKWKLVDI-VHTQQRVYMKRGWAGFRTLNRIGNGQTCRFKLIKENCCEYS 264 5679*******7778775..558************9874.66677899************************998555454 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-13 | 6 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-12 | 6 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-5 | 11 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-7 | 24 | 95 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.237 | 24 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.88E-6 | 49 | 98 | No hit | No description |
SuperFamily | SSF101936 | 8.44E-15 | 172 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-15 | 172 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.601 | 175 | 269 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.95E-7 | 176 | 261 | No hit | No description |
SMART | SM01019 | 0.0016 | 178 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-11 | 186 | 262 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MLVDPNKHPS FCKLLFKQGF MDKIMPPIFI KENKKLLAKT CLLKTNVVGM SWETKIVREN 60 SNYFICEGDW PQFVVHHKLE LGDILIFFLI DKSTFHVLPY SQKTFKNSSG RGAFQELTSS 120 SEEEHDVGIA RKLKKMKMEQ KESSGVVKKE EAEGGKEENV PKTTRFSVIN INNKDPYFEM 180 VVRKTHSFFM TIPKSFAIWT GITKMKKMRL VNGNGNKWKL VDIVHTQQRV YMKRGWAGFR 240 TLNRIGNGQT CRFKLIKENC CEYSVLQVQK IHKSKCLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g065340.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215404 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0163K16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233940.3 | 0.0 | B3 domain-containing protein REM9-like isoform X1 | ||||
TrEMBL | A0A3Q7EZQ4 | 0.0 | A0A3Q7EZQ4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g065340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4888 | 13 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 8e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g065340.1.1 |
Publications ? help Back to Top | |||
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