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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc02g065310.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
B3 |
Protein Properties |
Length: 228aa MW: 26048.8 Da PI: 8.5923 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc02g065310.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 53.3 | 5.1e-17 | 116 | 209 | 3 | 99 |
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
+ + ps+ ++s + l++ +fa+++ +++++s ++l+ sW v++ + ++ + ++ GW+ Fv +n+Lk+gD++vF++++ ++ +
Solyc02g065310.1.1 116 SFMHPSYISRSsNHLCIMLRFARTY-IPENCS-NIMLRVAGRGSWPVTY--STGKAQAKISIGWEAFVLDNKLKVGDVCVFEVIKGTQIFM 202
44445554444678********999.344565.9***************..88888899***********************998755559 PP
EEEEE-S CS
B3 93 vvkvfrk 99
+v++fr+
Solyc02g065310.1.1 203 NVTIFRA 209
9999986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MLIFYLVEKS TFHVLHYSKK PRTNIRHFEE LSSEDEVENV EEKEDEEENV EASRKSKKVK 60 TEPKESSAID NEGCKMQSQQ SSVIYDVRKT VMDKEKAIAY QRAKATFKSK NPFFISFMHP 120 SYISRSSNHL CIMLRFARTY IPENCSNIML RVAGRGSWPV TYSTGKAQAK ISIGWEAFVL 180 DNKLKVGDVC VFEVIKGTQI FMNVTIFRAA GSMPMQETDG QFVVSFH*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 8e-16 | 88 | 208 | 24 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-16 | 88 | 208 | 24 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC215367 | 1e-165 | Solanum lycopersicum chromosome 2 clone C02HBa0044L14, complete sequence |
GenBank | AC215404 | 1e-165 | Solanum lycopersicum chromosome 2 clone C02HBa0163K16, complete sequence |